[{"data":1,"prerenderedAt":105},["ShallowReactive",2],{"olmUZemHVRyb2Fsz5xgfitEa2ynUpGox0kxzkN5WfSM":3,"_apollo:default":103,"_apollo:identified":104},{"seo":4,"posts":15},{"social":5,"openGraph":11,"__typename":14},{"twitter":6,"__typename":10},{"cardType":7,"username":8,"__typename":9},"summary_large_image","dassault3ds","SEOSocialTwitter","SEOSocial",{"defaultImage":12,"__typename":13},null,"SEOOpenGraph","SEOConfig",{"nodes":16,"__typename":102},[17],{"id":18,"slug":19,"title":20,"uri":21,"excerpt":22,"locale":23,"featuredImage":26,"tableOfContents":34,"content":35,"date":36,"translations":37,"author":38,"tags":51,"globalTags":73,"brands":76,"keywords":87,"seo":90,"__typename":101},"cG9zdDozMTcwODI=","shafayat-ahmeds-biovia-internship-modernizing-antibody-developability-prediction","Shafayat Ahmed’s BIOVIA Internship: Modernizing Antibody Developability Prediction","\u002Fbrands\u002Fbiovia\u002Fshafayat-ahmeds-biovia-internship-modernizing-antibody-developability-prediction","\u003Cp>Discover the journey of Shafayat Ahmed, Software Engineering Intern at BIOVIA. Learn how Shafayat modernized antibody sequence annotation and developed an automated workflow for predicting antibody viscosity using ANARCII and DeepViscosity. \u003C\u002Fp>\n",{"locale":24,"__typename":25},"en_US","Locale",{"node":27,"__typename":33},{"large":28,"__typename":29,"medium_large":28,"thumbnail":30,"srcSet":31,"sizes":32},"https:\u002F\u002Fblog-assets.3ds.com\u002Fuploads\u002F2026\u002F10\u002Fblog-journey-into-shafayat-ahmeds-biovia-internship-768x421.png","MediaItem","https:\u002F\u002Fblog-assets.3ds.com\u002Fuploads\u002F2026\u002F10\u002Fblog-journey-into-shafayat-ahmeds-biovia-internship-150x150.png","https:\u002F\u002Fblog-assets.3ds.com\u002Fuploads\u002F2026\u002F10\u002Fblog-journey-into-shafayat-ahmeds-biovia-internship-300x165.png 300w, https:\u002F\u002Fblog-assets.3ds.com\u002Fuploads\u002F2026\u002F10\u002Fblog-journey-into-shafayat-ahmeds-biovia-internship-1024x562.png 1024w, https:\u002F\u002Fblog-assets.3ds.com\u002Fuploads\u002F2026\u002F10\u002Fblog-journey-into-shafayat-ahmeds-biovia-internship-768x421.png 768w, https:\u002F\u002Fblog-assets.3ds.com\u002Fuploads\u002F2026\u002F10\u002Fblog-journey-into-shafayat-ahmeds-biovia-internship.png 1291w","(max-width: 300px) 100vw, 300px","NodeWithFeaturedImageToMediaItemConnectionEdge",[],"\n\u003Cp>Shafayat Ahmed just completed his internship in Software Engineering with the Protein Modeling and Simulation team at BIOVIA. The overall goal of Shafayat’s project was to develop a modern, automated and reproducible antibody viscosity prediction workflow in \u003Ca href=\"https:\u002F\u002Fwww.3ds.com\u002Fproducts\u002Fbiovia\u002Fdiscovery-studio-simulation\">BIOVIA Discovery Studio Simulation\u003C\u002Fa>. Shafayat leveraged the \u003Ca href=\"https:\u002F\u002Fgetantibody.com\u002Fservices\u002Fanarcii\u002F\">ANARCII framework\u003C\u002Fa> and \u003Ca href=\"https:\u002F\u002Fwww.tandfonline.com\u002Fdoi\u002Fpdf\u002F10.1080\u002F19420862.2025.2483944\">DeepViscosity\u003C\u002Fa> to improve antibody viscosity prediction directly from protein sequences, eliminating the need for explicit 3D structure generation. He helped develop and integrate the workflow into \u003Ca href=\"https:\u002F\u002Fwww.3ds.com\u002Fproducts\u002Fbiovia\u002Fpipeline-pilot\">BIOVIA Pipeline Pilot\u003C\u002Fa>, creating a faster, more reproducible, and reliable pipeline for antibody sequence processing, viscosity prediction, downstream analysis, and result visualization.\u003C\u002Fp>\n\n\n\n\u003Cblockquote class=\"is-layout-flow wp-block-quote-is-layout-flow\">\n\u003Cp>I really enjoyed working at the intersection of computational biology, machine learning, and software engineering, and appreciated the guidance and support from mentors Defne Ozgulbas and Rohith Mohan, and rest of the BIOVIA Life Sciences Modeling and Simulation team throughout my internship. \u003C\u002Fp>\n\n\n\n\u003Cp>— Shafayat Ahmed\u003C\u002Fp>\n\u003C\u002Fblockquote>\n\n\n\n\u003Cp>Check out the video to learn more about Shafayat’s journey and his experience developing scientific software solutions at BIOVIA, Dassault Systèmes.\u003C\u002Fp>\n\n\n\u003Cdiv class=\"ds-video\">\u003Ca data-3ds-videoplayer=\"modal\" href=\"https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=Bq_NGDBGAHo\" target=\"_blank\">\u003Cspan class=\"ImageCover Border Block\" style=\"background-image: url(https:\u002F\u002Fimg.youtube.com\u002Fvi\u002FBq_NGDBGAHo\u002Fhqdefault.jpg); width:100%; height: 100%;\">\u003Cspan class=\"Btn--circle isCenter\">\u003Ci class=\"Icon Icon--playBig\">\u003C\u002Fi>\u003C\u002Fspan>\u003C\u002Fspan>\u003C\u002Fa>\u003Cspan>\u003Cfigure class=\"wp-block-embed is-type-video is-provider-youtube wp-block-embed-youtube wp-embed-aspect-16-9 wp-has-aspect-ratio\">\u003Cdiv class=\"wp-block-embed__wrapper\">\n\u003Ciframe loading=\"lazy\" title=\"Journey into Shafayat Ahmed’s BIOVIA Internship: Modernizing Antibody Developability Prediction\" width=\"640\" height=\"360\" src=\"https:\u002F\u002Fwww.youtube.com\u002Fembed\u002FBq_NGDBGAHo?feature=oembed\" frameborder=\"0\" allow=\"accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share\" referrerpolicy=\"strict-origin-when-cross-origin\" allowfullscreen>\u003C\u002Fiframe>\n\u003C\u002Fdiv>\u003C\u002Ffigure>\u003C\u002Fspan>\u003C\u002Fdiv>\n\n\n\u003Chr class=\"wp-block-separator has-alpha-channel-opacity\" \u002F>\n\n\n\n\u003Cp>\u003Ca id=\"_msocom_1\">\u003C\u002Fa>\u003C\u002Fp>\n\n\n\n\u003Cp>\u003C\u002Fp>\n","2026-10-22T10:00:00",[],{"node":39,"__typename":50},{"nicename":40,"description":41,"slug":42,"name":43,"firstName":42,"lastName":44,"avatar":45,"__typename":49},"defne","Dr. Defne G. Ozgulbas is an R&D Software Engineering Specialist on the Protein Modeling and Simulation team at BIOVIA, Dassault Systèmes. She received her Ph.D. in Biophysics and Computational Biology from the University of Illinois at Urbana-Champaign, where she was a Beckman Graduate Fellow in the Theoretical and Computational Biophysics Group. Her doctoral research focused on biomolecular modeling, protein design and engineering, and protein-membrane interactions using advanced molecular dynamics simulations. At BIOVIA, she develops modeling and simulation tools in BIOVIA Discovery Studio. Her work spans simulation methods, biologics and antibody workflows, developability assessment, and the intersection of AI\u002FML in these areas.","Defne","Defne Ozgulbas","Ozgulbas",{"default":46,"url":47,"__typename":48},"mm","https:\u002F\u002Fblog-assets.3ds.com\u002Fuploads\u002F2025\u002F07\u002Fcropped-headshot_dos2_cut-1-96x96.jpg","Avatar","User","NodeWithAuthorToUserConnectionEdge",{"edges":52,"nodes":65,"__typename":72},[53,60],{"isPrimary":54,"node":55,"__typename":59},true,{"slug":56,"name":57,"__typename":58},"company-news","Company News","Taxonomy_topic","PostToTaxonomy_topicConnectionEdge",{"isPrimary":61,"node":62,"__typename":59},false,{"slug":63,"name":64,"__typename":58},"workforce-of-the-future","Workforce of the future",[66,69],{"id":67,"name":57,"uri":68,"__typename":58},"dGVybTo4NTUz","\u002Ftopics\u002Fcompany-news\u002F",{"id":70,"name":64,"uri":71,"__typename":58},"dGVybTo4MjUw","\u002Ftopics\u002Fworkforce-of-the-future\u002F","PostToTaxonomy_topicConnection",{"nodes":74,"__typename":75},[],"PostToTaxonomy_tagConnection",{"edges":77,"nodes":84,"__typename":86},[78],{"isPrimary":54,"node":79,"__typename":83},{"slug":80,"name":81,"__typename":82},"biovia","BIOVIA","Taxonomy_brand","PostToTaxonomy_brandConnectionEdge",[85],{"name":81,"slug":80,"__typename":82},"PostToTaxonomy_brandConnection",{"nodes":88,"__typename":89},[],"PostToTaxonomy_keywordConnection",{"title":91,"metaDesc":92,"opengraphAuthor":93,"opengraphDescription":92,"opengraphTitle":20,"opengraphUrl":94,"opengraphSiteName":95,"opengraphPublishedTime":96,"opengraphModifiedTime":97,"twitterTitle":93,"twitterDescription":93,"readingTime":98,"metaRobotsNoindex":99,"__typename":100},"Shafayat Ahmed’s BIOVIA Internship: Modernizing Antibody Developability Prediction - Dassault Systèmes blog","Discover how BIOVIA intern Shafayat Ahmed developed an automated antibody viscosity prediction workflow using machine learning and BIOVIA software.","","https:\u002F\u002Fblog.3ds.com\u002Fbrands\u002Fbiovia\u002Fshafayat-ahmeds-biovia-internship-modernizing-antibody-developability-prediction\u002F","Dassault Systèmes blog","2026-10-22T10:00:00+00:00","2026-10-22T10:00:01+00:00",1,"index","PostTypeSEO","Post","RootQueryToPostConnection",{},{},1792663941855]